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National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) across the Pacific Remote Island Areas since 2014

Published by Pacific Islands Fisheries Science Center | National Oceanic and Atmospheric Administration, Department of Commerce | Metadata Last Checked: October 27, 2025 | Last Modified: 2023-11-02T00:00:00.000+00:00
The data described here result from benthic photo-quadrat surveys conducted along transects at stratified random sites across the American Samoa in 2015, 2018, and 2023 as a part of Rapid Ecological Assessment (REA) surveys for corals and fish. Benthic habitat imagery were quantitatively analyzed using the Coral Point Count with Excel extensions (CPCe; Kohler and Gill, 2006) software from 2010-2014 and using the web-based annotation tool CoralNet (Beijbom et al. 2016) from 2015 to present. Images are analyzed to produce three functional group levels of benthic cover: Tier 1 (e.g., coral, soft coral, macroalgae, turf algae, etc.), Tier 2 (e.g., Coral = massive hard coral, branching hard coral, foliose hard coral, encrusting hard coral, etc.; Macroalga = upright macroalgae), and Tier 3 (e.g., Coral = Astreopora sp, Favia sp, Pocillopora, etc.; Macroalgae = Caulerpa sp, Dictyosphaeria sp, Padina sp, etc.). If Tier 3 resolution is not possible, the next finest resolution is used. A stratified random sampling (StRS) design was employed to survey the coral reef ecosystems across the region. The survey domain encompassed the majority of the mapped area of reef and hard bottom habitats in the 0-30 m depth range. The stratification scheme included island, reef zone, and depth. Sampling effort was allocated based on strata area and sites were randomly located within strata. Sites were surveyed using photo-quadrats along transects to collect benthic imagery to ultimately produce estimates of relative abundance (benthic cover), frequency of occurrence, benthic community taxonomic composition and relative generic richness. The StRS design effectively reduces estimate variance through stratification using environmental covariates and by sampling more sites rather than sampling more transects at a site. Therefore, site-level estimates and site to site comparisons should be used with caution. The data from the benthic cover surveys can be accessed online via the NOAA National Centers for Environmental Information (NCEI) Ocean Archive.

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DOC/NOAA/NMFS/PIFSC/ESD > Ecosystem Sciences Division, Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce EARTH SCIENCE > BIOSPHERE > ECOLOGICAL DYNAMICS > COMMUNITY DYNAMICS EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > BENTHIC EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > REEF > CORAL REEF 743 National Coral Reef Monitoring Program Numeric Data Sets > Benthic EARTH SCIENCE > Biosphere > Aquatic Habitat > Benthic Habitat EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat EARTH SCIENCE > Biosphere > Microbiota > Blue-green Algae EARTH SCIENCE > Biosphere > Vegetation > Algae > Algal Cover EARTH SCIENCE > Biosphere > Vegetation > Algae > Crustose Coralline Algae EARTH SCIENCE > Biosphere > Vegetation > Algae > Encrusting Macroalgae EARTH SCIENCE > Biosphere > Vegetation > Algae > Turf Algae EARTH SCIENCE > Biosphere > Zoology > Corals EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Quadrat Monitoring > Photograph Analysis EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Transect Monitoring EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Transect Monitoring > Belt Transect EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Transect Monitoring > Point Counts EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > In Situ Biological EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Photographic Analysis EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Rapid Assessment Studies EARTH SCIENCE > Biosphere > Zoology > Mollusks > Tridacna EARTH SCIENCE > Biosphere > Zoology > Sponges EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Benthic biology EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Coral Cover EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Hard Coral Cover EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Octocoral Cover EARTH SCIENCE > Oceans > Marine Biology > Coral EARTH SCIENCE > Oceans > Marine Biology > Coral Communities EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Macroinvertebrates EARTH SCIENCE > Oceans > Marine Biology > Marine Plants > Seagrass REEF AND/OR BOTTOM REGIME - PERCENT COVER benthic communities machine-learning algorithm photograph benthic derived products visual estimate HI'IALAKAI OSCAR ELTON SETTE RAINIER CORAL REEF STUDIES Coral Reef Conservation Program National Coral Reef Monitoring Program US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Baker Island (00N176W0001) COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Howland Island (00S176W0001) COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Jarvis Island (00S160W0001) COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Johnston Atoll (16N169W0001) COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Kingman Reef (06N162W0001) COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Palmyra Atoll (05N162W0001) COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Wake Atoll (19N167E0001) OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Baker Island > Baker Island (00N176W0001) OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Howland Island > Howland Island (00S176W0001) OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Johnston Atoll > Johnston Atoll (16N169W0001) OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Line Islands > Jarvis Island (00S160W0001) OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Line Islands > Kingman Reef (06N162W0001) OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Line Islands > Palmyra Atoll (05N162W0001) OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Wake Atoll > Wake Atoll (19N167E0001) Central Pacific Ocean Equatorial Pacific Ocean Pacific Remote Islands Marine National Monument CRED CREP Coral Point Count Coral Reef Ecosystem Division Coral Reef Ecosystem Program CoralNet ESD Ecosystem Sciences Division PIFSC Pacific Islands Fisheries Science Center RAMP Reef Assessment and Monitoring Program robot-assisted annotations PRIA PRIMNM Pacific Remote Island Areas DOC/NOAA/NMFS/PIFSC > Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce Pacific Remote Island Areas

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