Data and code from: Avocado cultivar and tree-to-tree leaf compositional differences affect infestation severity of avocado lace bug, <i>Pseudocysta perseae</i> (Hemiptera: Tingidae)

<p dir="ltr">Datasets and R script used for article accepted to Environmental Entomology (June 5, 2024):"Avocado cultivar and tree-to-tree leaf compositional differences affect infestation severity of avocado lace bug, <i>Pseudocysta perseae</i> (Hemiptera: Tingidae)."<br>Authors: Bosch, Michael; Sun, Xiuxiu; Hall, Sierra; Love, Ken; Cox, David; Matsumoto, Tracie; Liang, Peishih; Follett, Peter; Stockton, Dara<br></p><p dir="ltr"><b>Rep_GLMM_UHKCES.csv</b>: Data used for repeated measures generalized linear mixed model for abundance surveys conducted at the University of Hawai'i Kona Cooperative Extension Service orchard.</p><p dir="ltr"><b>Rep_GLMM_CC.csv</b>: Data used for repeated measures generalized linear mixed model for abundance surveys conducted at the Captain Cook orchard.</p><p dir="ltr"><b>ALB_Honaunau.csv</b>: Data summarizing avocado lace bug abundance from leaves collected from the Honaunau orchard. Is to be used to perform generalized linear mixed models between lace bug abundance and sugars in corresponding avocado leaves.</p><p dir="ltr"><b>LeafTraits_Honaunau.csv</b>: Data for performing generalized linear mixed models between avocado lace bug abundance and several avocado leaf traits from leaves collected from the Honaunau orchard.</p><p dir="ltr"><b>Sugars_Honaunau.csv</b>: Data for performing generalized linear mixed models between avocado lace bug abundance and avocado leaf sugar content from leaves collected from the Honaunau orchard.</p><p dir="ltr"><b>Fig1_Average.csv</b>: Data averaging avocado lace bug abundance across trees surveyed at the University of Hawai'i Kona Cooperative Extension Service and Captain Cook orchards. To be used to generating figure 1 in manuscript.</p><p dir="ltr"><b>Fig1_Sites.csv</b>: Data on avocado lace bug abundance across trees surveyed at the University of Hawai'i Kona Cooperative Extension Service and Captain Cook orchards. To be used to generating figure 1 in manuscript.<br><br><b>LogOdds_USDAGermplasm.csv</b>: Data used for performing a repeated measures proportional odds logistic regression on avocado lace bug infestation category surveys conducted at the USDA Germplasm Repository.</p><p><br></p><p dir="ltr"><b>EE_Rscript.R</b>: R script used to run analyses conducted and construct figures presented in the corresponding manuscript. Required R packages include:</p><ul><li>tidyverse</li><li>reshape2</li><li>DHARMa</li><li>scales</li><li>glmmTMB</li><li>emmeans</li><li>cowplot</li><li>repolr</li></ul><p></p>

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