Search Data.gov
Found 191 dataset(s) matching "variant".
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The precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex (MHC). Starting with FASTQ files,...
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__Note:__ This dataset is no longer being updated due to the end of the COVID-19 Public Health Emergency. The California Department of Public Health (CDPH) is identifying the prevalence of...
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<p dir="ltr"><i>Salmonella</i> pangenome graph and variant call data for 539,283 genomes</p><h3>Description:</h3><p dir="ltr"><i>Salmonella enterica</i> causes human disease and decreases...
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Background Mutations in BRCA1 and BRCA2 account for approximately 50% of breast cancer families with more than four affected cases, whereas exonic mutations in p53, PTEN, CHK2 and ATM...
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Background Non-invasive autofluorescent reporters have revolutionized lineage labeling in an array of different organisms. In recent years green fluorescent protein (GFP) from the...
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<p dir="ltr">This repository contains the code used for the study: "Variant Filters Using Segregation Information Improve Mapping of Nectar-Production Genes in Sunflower (Helianthus annuus L.)"....
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The data set includes the sample metadata, quantitative data of measurements of SARS-CoV-2 gene fragments in wastewater and variant presence interpreted from sequence data. This dataset is...
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Background SP100 is a nuclear protein that displays a number of alternative splice variants. In Old World monkeys, apes and humans one of these variants is extended by a retroprocessed...
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Genes in the human leukocyte antigen (HLA) region remain the most powerful disease risk genes in rheumatoid arthritis (RA). Several allelic variants of HLA-DRB1 genes have been associated with RA,...
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The interleukin-4 (IL-4) signalling cascade has been identified as a pathway potentially important in the development of asthma. Genetic variants within this signalling pathway might contribute to...
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<p>A controlled influenza A virus transmission experiment was conducted in biosafety level 2 containment from January 23, 2018- February 13, 2018 assessing the respiratory droplet transmission...
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<p>High-throughput sequencing (HTS) of reduced representation genomic libraries has ushered in an era of genotyping-by-sequencing (GBS), where genome-wide genotype data can be obtained for nearly...
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Background Alternative mRNA splicing of αi2, a heterotrimeric G protein α subunit, has been shown to produce an additional protein, termed sαi2. In the sαi2 splice variant, 35 novel...
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Bacillus pumilus SAFR-032, an endospore-forming bacterial strain, was investigated to determine its methylation pattern (methylome) change, compared to ground control, after direct exposure to...
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The files provided in this U.S. Geological Survey (USGS) data release (Kellogg and others, 2021) include an amplicon sequence variant (ASV) table and the raw 16S rRNA gene amplicon files from six...
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<ul><li><b>Genotypic Data (VCFs):</b><ul><li>All VCF files contain imputed, biallelic SNPs derived from the same population but differ in the filtering strategies...
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TEM analysis of particle morphology and size. Citation information for this dataset can be found in the EDG's Metadata Reference Information section and Data.gov's References section.
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<p>This collection contains supplementary data for the manuscript "Genotypic characterization of the U.S. Peanut Core Collection", which describes genotyping results for the USDA peanut core...
