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Found 72 dataset(s) matching "variant sequencing".
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The files provided in this U.S. Geological Survey (USGS) data release (Kellogg and others, 2021) include an amplicon sequence variant (ASV) table and the raw 16S rRNA gene amplicon files from six...
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Bacillus pumilus SAFR-032, an endospore-forming bacterial strain, was investigated to determine its methylation pattern (methylome) change, compared to ground control, after direct exposure to...
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__Note:__ This dataset is no longer being updated due to the end of the COVID-19 Public Health Emergency. The California Department of Public Health (CDPH) is identifying the prevalence of...
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The precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex (MHC). Starting with FASTQ files,...
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A method of preparing a modified granulocyte colony stimulating factor (G-CSF) protein having reduced immunogenicity relative to human G-CSF comprises the steps of (i) identifying one or more...
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<p>High-throughput sequencing (HTS) of reduced representation genomic libraries has ushered in an era of genotyping-by-sequencing (GBS), where genome-wide genotype data can be obtained for nearly...
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Background Mutations in the CHK2 gene at chromosome 22q12.1 have been reported in families with Li-Fraumeni syndrome. Chk2 is an effector kinase that is activated in response to DNA...
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These raw data associated with this research were collected as part of the United States Environmental Protection Agency's 2018-2019 National Rivers and Streams Assessment (NRSA). The worksheet...
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<p>Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit flies, melon fly (Zeugodacus...
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<p dir="ltr">The ribosomal RNA (rRNA) internal transcribed spacer (ITS) regions are commonly used to identify fungi and other eukaryotic taxa in amplicon sequencing. The highly conserved rRNA...
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Data from environmental DNA (eDNA) samples filtered from seawater collected in the Gulf of America during a research expedition on the R/V Point Sur in September 2022. Samples were collected at...
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Data from environmental DNA (eDNA) samples filtered from seawater collected in the Gulf of America during a research expedition on the R/V Nancy Foster in August 2022. Samples were collected at...
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Data from environmental DNA (eDNA) samples filtered from seawater collected in the Gulf of America during a research expedition on the NOAA Ship Pisces from June 30-July 11, 2022. Samples were...
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Amplicon sequence variants from benthic and zooplankton samples generated using COI primers
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Amplicon sequence variants from benthic and zooplankton samples generated using COI and 18S primers
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Amplicon sequence variants from benthic and zooplankton samples generated using COI primers This research dataset has been reviewed in accordance with U.S. Environmental Protection Agency (U.S....
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Amplicon sequence variants from ballast water samples generated with primer sets targeting 18S and COI loci “This research dataset has been reviewed in accordance with U.S. Environmental...
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Background The potential adaptive significance of transposable elements (TEs) to the host genomes in which they reside is a topic that has been hotly debated by molecular evolutionists...
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The data set includes the sample metadata, quantitative data of measurements of SARS-CoV-2 gene fragments in wastewater and variant presence interpreted from sequence data. This dataset is...
